Skip to content

Class: Experiment

A group of observations (phenotypic outcomes and their control) that are linked by a common exposure event and subject, and that are part of a study.

URI: zebrafish_toxicology_atlas_schema:Experiment

classDiagram class Experiment click Experiment href "../Experiment/" Entity <|-- Experiment click Entity href "../Entity/" Experiment : control Experiment --> "*" Control : control click Control href "../Control/" Experiment : exposure_event Experiment --> "*" ExposureEvent : exposure_event click ExposureEvent href "../ExposureEvent/" Experiment : fish Experiment --> "0..1" Fish : fish click Fish href "../Fish/" Experiment : rearing_condition_comment Experiment : standard_rearing_condition Experiment : uuid

Inheritance

Slots

Name Cardinality and Range Description Inheritance
standard_rearing_condition 0..1
Boolean		 An indication of whether the subject was maintained under standard conditions... direct
rearing_condition_comment 0..1
String		 Comments on rearing conditions, for example, about how conditions deviated fr... direct
fish 0..1
Fish		 The fish subject of the experiment direct
control *
Control		 An observation that serves as the reference for assessing phenotypic outcome direct
exposure_event *
ExposureEvent		 The exposure event in an experiment direct
uuid 1
String		 UUID identifier Entity

Usages

used by used in type used
Study experiment range Experiment

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema

Mappings

Mapping Type Mapped Value
self zebrafish_toxicology_atlas_schema:Experiment
native zebrafish_toxicology_atlas_schema:Experiment

LinkML Source

Direct

name: Experiment
description: A group of observations (phenotypic outcomes and their control) that
  are linked by a common exposure event and subject, and that are part of a study.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: Entity
slots:
- standard_rearing_condition
- rearing_condition_comment
- fish
- control
- exposure_event

Induced

name: Experiment
description: A group of observations (phenotypic outcomes and their control) that
  are linked by a common exposure event and subject, and that are part of a study.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: Entity
attributes:
  standard_rearing_condition:
    name: standard_rearing_condition
    description: An indication of whether the subject was maintained under standard
      conditions, which are the established, consistent environmental and husbandry
      parameters (such as temperature, lighting, diet, and housing) designed to minimize
      variability and ensure reproducibility in experiments.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: standard_rearing_condition
    owner: Experiment
    domain_of:
    - Experiment
    range: boolean
  rearing_condition_comment:
    name: rearing_condition_comment
    description: Comments on rearing conditions, for example, about how conditions
      deviated from standard parameters.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: rearing_condition_comment
    owner: Experiment
    domain_of:
    - Experiment
    range: string
  fish:
    name: fish
    description: The fish subject of the experiment.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: fish
    owner: Experiment
    domain_of:
    - Experiment
    range: Fish
    inlined: true
    inlined_as_list: true
  control:
    name: control
    description: An observation that serves as the reference for assessing phenotypic
      outcome.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: control
    owner: Experiment
    domain_of:
    - Experiment
    range: Control
    multivalued: true
    inlined: true
    inlined_as_list: true
  exposure_event:
    name: exposure_event
    description: The exposure event in an experiment.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: exposure_event
    owner: Experiment
    domain_of:
    - Experiment
    range: ExposureEvent
    multivalued: true
    inlined: true
    inlined_as_list: true
  uuid:
    name: uuid
    description: UUID identifier.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    identifier: true
    alias: uuid
    owner: Experiment
    domain_of:
    - Entity
    range: string
    required: true