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Class: Study

A toxicological investigation, including the experimental conditions and phenotypic outcomes, with information provenance.

URI: zebrafish_toxicology_atlas_schema:Study

classDiagram class Study click Study href "../Study/" Entity <|-- Study click Entity href "../Entity/" Study : annotator Study : experiment Study --> "*" Experiment : experiment click Experiment href "../Experiment/" Study : lab Study : publication Study : uuid

Inheritance

Slots

Name Cardinality and Range Description Inheritance
experiment *
Experiment		 The experiment in a study direct
publication 0..1
String		 The publication identifier (e direct
annotator *
Uriorcurie		 ORCID identifier of the indidvidual submitting the study data direct
lab 0..1
Uriorcurie		 ZFIN lab identifier of the laboratory that produced the study data direct
uuid 1
String		 UUID identifier Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema

Mappings

Mapping Type Mapped Value
self zebrafish_toxicology_atlas_schema:Study
native zebrafish_toxicology_atlas_schema:Study

LinkML Source

Direct

name: Study
description: A toxicological investigation, including the experimental conditions
  and phenotypic outcomes, with information provenance.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: Entity
slots:
- experiment
- publication
- annotator
- lab

Induced

name: Study
description: A toxicological investigation, including the experimental conditions
  and phenotypic outcomes, with information provenance.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: Entity
attributes:
  experiment:
    name: experiment
    description: The experiment in a study.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: experiment
    owner: Study
    domain_of:
    - Study
    range: Experiment
    multivalued: true
    inlined: true
    inlined_as_list: true
  publication:
    name: publication
    description: The publication identifier (e.g., PMID, DOI) for the study or "not
      published" if the study is unpublished.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: publication
    owner: Study
    domain_of:
    - Study
    range: string
  annotator:
    name: annotator
    description: ORCID identifier of the indidvidual submitting the study data.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: annotator
    owner: Study
    domain_of:
    - Study
    range: uriorcurie
    multivalued: true
    pattern: ^ORCID:[0-9]{4}-[0-9]{4}-[0-9]{4}-[0-9]{3}[0-9X]$
  lab:
    name: lab
    description: ZFIN lab identifier of the laboratory that produced the study data.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: lab
    owner: Study
    domain_of:
    - Study
    range: uriorcurie
    pattern: ^ZFIN:ZDB-LAB-[0-9]+-[0-9]+$
  uuid:
    name: uuid
    description: UUID identifier.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    identifier: true
    alias: uuid
    owner: Study
    domain_of:
    - Entity
    range: string
    required: true