Class: Phenotype

Any measurable or visible trait change in the subject as a result of exposure.

URI: zebrafish_toxicology_atlas_schema:Phenotype

classDiagram class Phenotype click Phenotype href "../Phenotype/" Entity <|-- Phenotype click Entity href "../Entity/" Phenotype : phenotype_term_id Phenotype : prevalence Phenotype --> "0..1" QuantityValue : prevalence click QuantityValue href "../QuantityValue/" Phenotype : severity Phenotype --> "0..1" SeverityEnum : severity click SeverityEnum href "../SeverityEnum/" Phenotype : stage Phenotype : uuid

Inheritance

Entity
- Phenotype

Slots

Name	Cardinality and Range	Description	Inheritance
stage	0..1 Uriorcurie	The developmental stage of fish when the phenotype was observed	direct
prevalence	0..1 QuantityValue	The percentage of subject exhibiting this phenotype	direct
severity	0..1 SeverityEnum	The intensity of the observed phenotype	direct
phenotype_term_id	0..1 Uriorcurie	The phenotype ontology term identifier	direct
uuid	1 String	UUID identifier	Entity

Usages

used by	used in	type	used
PhenotypeObservationSet	phenotype	range	Phenotype

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema

Mappings

Mapping Type	Mapped Value
self	zebrafish_toxicology_atlas_schema:Phenotype
native	zebrafish_toxicology_atlas_schema:Phenotype

LinkML Source

Direct

name: Phenotype
description: Any measurable or visible trait change in the subject as a result of
  exposure.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: Entity
slots:
- stage
- prevalence
- severity
- phenotype_term_id

Induced

name: Phenotype
description: Any measurable or visible trait change in the subject as a result of
  exposure.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: Entity
attributes:
  stage:
    name: stage
    description: The developmental stage of fish when the phenotype was observed.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: stage
    owner: Phenotype
    domain_of:
    - Phenotype
    range: uriorcurie
  prevalence:
    name: prevalence
    description: The percentage of subject exhibiting this phenotype.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: prevalence
    owner: Phenotype
    domain_of:
    - Phenotype
    range: QuantityValue
    inlined: true
    inlined_as_list: true
  severity:
    name: severity
    description: The intensity of the observed phenotype.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: severity
    owner: Phenotype
    domain_of:
    - Phenotype
    range: SeverityEnum
  phenotype_term_id:
    name: phenotype_term_id
    description: The phenotype ontology term identifier.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: phenotype_term_id
    owner: Phenotype
    domain_of:
    - Phenotype
    range: uriorcurie
  uuid:
    name: uuid
    description: UUID identifier.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    identifier: true
    alias: uuid
    owner: Phenotype
    domain_of:
    - Entity
    range: string
    required: true