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Class: StressorChemical

A chemical that elicits a response (a phenotype) in a subject when encountered through exposure.

URI: zebrafish_toxicology_atlas_schema:StressorChemical

classDiagram class StressorChemical click StressorChemical href "../StressorChemical/" ZappEntity <|-- StressorChemical click ZappEntity href "../ZappEntity/" StressorChemical : cas_id StressorChemical : chemical_id StressorChemical : chemical_name StressorChemical : comment StressorChemical : concentration StressorChemical --> "1" QuantityValue : concentration click QuantityValue href "../QuantityValue/" StressorChemical : id StressorChemical : manufacturer StressorChemical --> "0..1" ManufacturerEnum : manufacturer click ManufacturerEnum href "../ManufacturerEnum/" StressorChemical : synonym

Inheritance

Slots

Name Cardinality and Range Description Inheritance
chemical_id 0..1
Uriorcurie		 Chemical identifier (e direct
cas_id 0..1
String		 CAS identifier for the chemical direct
chemical_name 0..1
String		 Name of the chemical direct
synonym *
String		 Other names for the chemical direct
manufacturer 0..1
ManufacturerEnum		 The manufacturer or supplier of the chemical direct
concentration 1
QuantityValue		 The dose or concentration of the chemical to which the subject was exposed to direct
comment 0..1
String		 Additional comments direct
id 1
Integer		 Auto-generated integer identifier ZappEntity

Usages

used by used in type used
ExposureEvent stressor range StressorChemical

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema

Mappings

Mapping Type Mapped Value
self zebrafish_toxicology_atlas_schema:StressorChemical
native zebrafish_toxicology_atlas_schema:StressorChemical

LinkML Source

Direct

name: StressorChemical
description: A chemical that elicits a response (a phenotype) in a subject when encountered
  through exposure.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: ZappEntity
slots:
- chemical_id
- cas_id
- chemical_name
- synonym
- manufacturer
- concentration
- comment

Induced

name: StressorChemical
description: A chemical that elicits a response (a phenotype) in a subject when encountered
  through exposure.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: ZappEntity
attributes:
  chemical_id:
    name: chemical_id
    description: Chemical identifier (e.g., a CHEBI or other ontology URI) for the
      chemical.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: StressorChemical
    domain_of:
    - StressorChemical
    range: uriorcurie
  cas_id:
    name: cas_id
    description: CAS identifier for the chemical.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: StressorChemical
    domain_of:
    - StressorChemical
    range: string
  chemical_name:
    name: chemical_name
    description: Name of the chemical.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: StressorChemical
    domain_of:
    - StressorChemical
    range: string
  synonym:
    name: synonym
    description: Other names for the chemical.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: StressorChemical
    domain_of:
    - StressorChemical
    range: string
    multivalued: true
  manufacturer:
    name: manufacturer
    description: The manufacturer or supplier of the chemical.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: StressorChemical
    domain_of:
    - StressorChemical
    - VehicleOfTransmission
    range: ManufacturerEnum
  concentration:
    name: concentration
    description: The dose or concentration of the chemical to which the subject was
      exposed to.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: StressorChemical
    domain_of:
    - StressorChemical
    - VehicleOfTransmission
    range: QuantityValue
    required: true
    inlined: true
    inlined_as_list: true
  comment:
    name: comment
    description: Additional comments.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: StressorChemical
    domain_of:
    - Control
    - ExposureEvent
    - StressorChemical
    - VehicleOfTransmission
    range: string
  id:
    name: id
    description: Auto-generated integer identifier.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    identifier: true
    owner: StressorChemical
    domain_of:
    - ZappEntity
    range: integer
    required: true