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Class: Phenotype

Any measurable or visible trait change in the subject as a result of exposure.

URI: zebrafish_toxicology_atlas_schema:Phenotype

classDiagram class Phenotype click Phenotype href "../Phenotype/" ZappEntity <|-- Phenotype click ZappEntity href "../ZappEntity/" Phenotype : id Phenotype : phenotype_term_id Phenotype --> "0..1" PhenotypeTerm : phenotype_term_id click PhenotypeTerm href "../PhenotypeTerm/" Phenotype : prevalence Phenotype --> "0..1" QuantityValue : prevalence click QuantityValue href "../QuantityValue/" Phenotype : severity Phenotype --> "0..1" SeverityEnum : severity click SeverityEnum href "../SeverityEnum/" Phenotype : stage

Inheritance

Slots

Name Cardinality and Range Description Inheritance
stage 0..1
Uriorcurie		 The developmental stage of fish when the phenotype was observed direct
prevalence 0..1
QuantityValue		 The percentage of subject exhibiting this phenotype direct
severity 0..1
SeverityEnum		 The intensity of the observed phenotype direct
phenotype_term_id 0..1
PhenotypeTerm		 The phenotype ontology term direct
id 1
Integer		 Auto-generated integer identifier ZappEntity

Usages

used by used in type used
PhenotypeObservationSet phenotype range Phenotype

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema

Mappings

Mapping Type Mapped Value
self zebrafish_toxicology_atlas_schema:Phenotype
native zebrafish_toxicology_atlas_schema:Phenotype

LinkML Source

Direct

name: Phenotype
description: Any measurable or visible trait change in the subject as a result of
  exposure.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: ZappEntity
slots:
- stage
- prevalence
- severity
- phenotype_term_id

Induced

name: Phenotype
description: Any measurable or visible trait change in the subject as a result of
  exposure.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: ZappEntity
attributes:
  stage:
    name: stage
    description: The developmental stage of fish when the phenotype was observed.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: Phenotype
    domain_of:
    - Phenotype
    range: uriorcurie
  prevalence:
    name: prevalence
    description: The percentage of subject exhibiting this phenotype.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: Phenotype
    domain_of:
    - Phenotype
    range: QuantityValue
    inlined: true
    inlined_as_list: true
  severity:
    name: severity
    description: The intensity of the observed phenotype.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: Phenotype
    domain_of:
    - Phenotype
    range: SeverityEnum
  phenotype_term_id:
    name: phenotype_term_id
    description: The phenotype ontology term.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: Phenotype
    domain_of:
    - Phenotype
    range: PhenotypeTerm
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: Auto-generated integer identifier.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    identifier: true
    owner: Phenotype
    domain_of:
    - ZappEntity
    range: integer
    required: true