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Events

Workshops & Meetings

Workshop #2 - Introduction to Data Annotations

Data Annotations · March 19, 2025

Workshop goals and content

The goals of this workshop was to introduce the concept of a “data model” and gather all the information required to represent zebrafish toxicology phenotype data.

By using real data generated by participants and through hands-on exercises, we identified all information required to report, understand, and reuse/reproduce toxicological assays. This information focused on

  • the toxicological exposure or treatment
  • phenotype observed after exposure or treatment

We also explored the ways community members would submit data, in order to plan how to create the data submission platform.

Workshop material and resources

Workshop #1 - Project kick-off workshop

Zebrafish Toxicology Phenotype Atlas project kick-off workshop · January 15, 2025

Workshop goals and content

  • discussed the key challenges in accessing, reusing, and integrating zebrafish toxicology and phenotype data
  • introduced the project goals in creating an open, searchable, community-driven zebrafish toxicology phenotype atlas to improve data consistency, integration and alignment with cross-species data standards
  • reviewed the potential pitfalls of the atlas, with proposed mitigation strategies
  • discussed the role of sematic technologies and ontologies in atlas development and data interoperability
  • introduced project governance and proposed how the community will engage and contribute
  • conducted hands-on exercise to review the images of the most common, strangest, and hardest-to-annotate zebrafish phenotypes

Workshop material and resources