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Class: Study

A toxicological investigation, including the experimental conditions and phenotypic outcomes, with information provenance.

URI: zebrafish_toxicology_atlas_schema:Study

classDiagram class Study click Study href "../Study/" ZappEntity <|-- Study click ZappEntity href "../ZappEntity/" Study : annotator Study : experiment Study --> "*" Experiment : experiment click Experiment href "../Experiment/" Study : id Study : lab Study : publication

Inheritance

Slots

Name Cardinality and Range Description Inheritance
experiment *
Experiment		 The experiment in a study direct
publication 0..1
String		 The publication identifier (e direct
annotator *
Uriorcurie		 ORCID identifier of the indidvidual submitting the study data direct
lab 0..1
Uriorcurie		 ZFIN lab identifier of the laboratory that produced the study data direct
id 1
Integer		 Auto-generated integer identifier ZappEntity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema

Mappings

Mapping Type Mapped Value
self zebrafish_toxicology_atlas_schema:Study
native zebrafish_toxicology_atlas_schema:Study

LinkML Source

Direct

name: Study
description: A toxicological investigation, including the experimental conditions
  and phenotypic outcomes, with information provenance.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: ZappEntity
slots:
- experiment
- publication
- annotator
- lab

Induced

name: Study
description: A toxicological investigation, including the experimental conditions
  and phenotypic outcomes, with information provenance.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: ZappEntity
attributes:
  experiment:
    name: experiment
    description: The experiment in a study.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: Study
    domain_of:
    - Study
    range: Experiment
    multivalued: true
    inlined: true
    inlined_as_list: true
  publication:
    name: publication
    description: The publication identifier (e.g., PMID, DOI) for the study or "not
      published" if the study is unpublished.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: Study
    domain_of:
    - Study
    range: string
  annotator:
    name: annotator
    description: ORCID identifier of the indidvidual submitting the study data.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: Study
    domain_of:
    - Study
    range: uriorcurie
    multivalued: true
    pattern: ^ORCID:[0-9]{4}-[0-9]{4}-[0-9]{4}-[0-9]{3}[0-9X]$
  lab:
    name: lab
    description: ZFIN lab identifier of the laboratory that produced the study data.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    owner: Study
    domain_of:
    - Study
    range: uriorcurie
    pattern: ^ZFIN:ZDB-LAB-[0-9]+-[0-9]+$
  id:
    name: id
    description: Auto-generated integer identifier.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    identifier: true
    owner: Study
    domain_of:
    - ZappEntity
    range: integer
    required: true